Gene: CRU_007G22140 (Capsella rubella)

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Gene Identifier
CRU_007G22140
Transcript Identifier
CRU_007G22140.1
Gene Type
Coding gene
Location
scaffold_7 : 8769081-8772742 : positive

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10007527m.g
idPAC:20893916

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0009584IEAGenome Projectdetection of visible light
GO:0018298IEAGenome Projectprotein-chromophore linkage
GO:0007165IEAGenome Projectsignal transduction
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008020IEAGenome ProjectG-protein coupled photoreceptor activity
GO:0000155IEAGenome Projectphosphorelay sensor kinase activity
GO:0005515IEAGenome Projectprotein binding
GO:0005524IEAGenome ProjectATP binding
GO:0004871IEAInterProsignal transducer activity
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAGenome Projectmembrane

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR001294Phytochrome
IPR003018GAF domain
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR013515Phytochrome, central region
IPR016132Phytochrome chromophore attachment domain
IPR013516Phytochrome chromophore binding site
IPR013654PAS fold-2
IPR013767PAS fold
IPR005467Signal transduction histidine kinase, core

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.