Gene: CRU_006G13790 (Capsella rubella)

Overview top

Gene Identifier
CRU_006G13790
Transcript Identifier
CRU_006G13790.1
Gene Type
Coding gene
Location
scaffold_6 : 5249332-5250420 : positive

Family

Gene family
HOM03D000908
(161 genes in 30 species)
specific family
Subfamily
ORTHO03D005673
(33 genes in 17 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
S-adenosylmethionine decarboxylase proenzyme 3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10001243m.g
idPAC:20911116

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006597IEAGenome Projectspermine biosynthetic process
GO:0008295IEAGenome Projectspermidine biosynthetic process
GO:0019079ISOPLAZA Tree-based Orthologyviral genome replicationAT3G02470
GO:0016458ISOPLAZA Tree-based Orthologygene silencingAT3G02470
GO:0006596ISOPLAZA Tree-based Orthologypolyamine biosynthetic processAT3G02470
GO:0006595IEAPLAZA Homologypolyamine metabolic processHOM03D000908
GO:0044106IEAPLAZA Homologycellular amine metabolic processHOM03D000908
GO:0006576IEAPLAZA Homologycellular biogenic amine metabolic processHOM03D000908
GO:0042401IEAPLAZA Homologycellular biogenic amine biosynthetic processHOM03D000908
GO:0008215IEAPLAZA Homologyspermine metabolic processHOM03D000908
GO:0009308IEAPLAZA Homologyamine metabolic processHOM03D000908
GO:0008216IEAPLAZA Homologyspermidine metabolic processHOM03D000908
GO:0009309IEAPLAZA Homologyamine biosynthetic processHOM03D000908

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004014IEAGenome Projectadenosylmethionine decarboxylase activity
GO:0005515ISOPLAZA Tree-based Orthologyprotein bindingAT3G02470
GO:0016829IEAPLAZA Homologylyase activityHOM03D000908
GO:0016831IEAPLAZA Homologycarboxy-lyase activityHOM03D000908
GO:0016830IEAPLAZA Homologycarbon-carbon lyase activityHOM03D000908

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR016067S-adenosylmethionine decarboxylase, core
IPR018166S-adenosylmethionine decarboxylase, conserved site
IPR001985S-adenosylmethionine decarboxylase
IPR018167S-adenosylmethionine decarboxylase subgroup

Mapman id Description
22.1.2polyamine metabolism.synthesis.SAM decarboxylase
No SignalP domains detected for this gene.