Gene: CRU_006G03080 (Capsella rubella)

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Gene Identifier
CRU_006G03080
Transcript Identifier
CRU_006G03080.1
Gene Type
Coding gene
Location
scaffold_6 : 1149922-1152257 : positive

Family

Gene family
HOM03D001241
(124 genes in 31 species)
specific family
Subfamily
ORTHO03D000986
(60 genes in 31 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Transcription initiation factor IIB
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10003094m.g
idPAC:20910881

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006413IEAGenome Projecttranslational initiation
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0006352IEAGenome ProjectDNA-dependent transcription, initiation
GO:0080092ISOPLAZA Tree-based Orthologyregulation of pollen tube growthAT2G41630
GO:0010183ISOPLAZA Tree-based Orthologypollen tube guidanceAT2G41630
GO:0009960ISOPLAZA Tree-based Orthologyendosperm developmentAT2G41630
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D001241

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003743IEAGenome Projecttranslation initiation factor activity
GO:0008270IEAGenome Projectzinc ion binding
GO:0017025IEAInterProTBP-class protein binding
GO:0008134IEAPLAZA Homologytranscription factor bindingHOM03D001241

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT3G10330
GO:0005634ISOPLAZA Integrative OrthologynucleusAT3G10330 AT2G41630

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000812Transcription factor TFIIB
IPR013763Cyclin-like
IPR023486Transcription factor TFIIB, conserved site
IPR013137Zinc finger, TFIIB-type
IPR013150Transcription factor TFIIB, cyclin-like domain

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.