Gene: CRU_005G19930 (Capsella rubella)

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Gene Identifier
CRU_005G19930
Transcript Identifier
CRU_005G19930.1
Gene Type
Coding gene
Location
scaffold_5 : 10386299-10387594 : positive

Family

Gene family
HOM03D000197
(520 genes in 31 species)
specific family
Subfamily
ORTHO03D006026
(33 genes in 23 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Probable histone H2A variant 2
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10018149m.g
idPAC:20886799

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAInterPronucleosome assembly
GO:0009909ISOPLAZA Tree-based Orthologyregulation of flower developmentAT2G38810
GO:0044030ISOPLAZA Integrative Orthologyregulation of DNA methylationAT3G54560 AT2G38810
GO:0016048ISOPLAZA Integrative Orthologydetection of temperature stimulusAT3G54560
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT3G54560
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000197
GO:0071824IEAPLAZA Homologyprotein-DNA complex subunit organizationHOM03D000197
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000197
GO:0071822IEAPLAZA Homologyprotein complex subunit organizationHOM03D000197
GO:0006325IEAPLAZA Homologychromatin organizationHOM03D000197
GO:0070271IEAPLAZA Homologyprotein complex biogenesisHOM03D000197
GO:0006323IEAPLAZA HomologyDNA packagingHOM03D000197
GO:0043933IEAPLAZA Homologymacromolecular complex subunit organizationHOM03D000197
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000197
GO:0031497IEAPLAZA Homologychromatin assemblyHOM03D000197
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000197
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000197
GO:0006996IEAPLAZA Homologyorganelle organizationHOM03D000197
GO:0071103IEAPLAZA HomologyDNA conformation changeHOM03D000197
GO:0065003IEAPLAZA Homologymacromolecular complex assemblyHOM03D000197
GO:0065004IEAPLAZA Homologyprotein-DNA complex assemblyHOM03D000197
GO:0006333IEAPLAZA Homologychromatin assembly or disassemblyHOM03D000197
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000197
GO:0016043IEAPLAZA Homologycellular component organizationHOM03D000197
GO:0051276IEAPLAZA Homologychromosome organizationHOM03D000197
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000197
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000197
GO:0044085IEAPLAZA Homologycellular component biogenesisHOM03D000197
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000197
GO:0022607IEAPLAZA Homologycellular component assemblyHOM03D000197
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03D000197
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03D000197
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000197
GO:0034622IEAPLAZA Homologycellular macromolecular complex assemblyHOM03D000197
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000197
GO:0044699IEAPLAZA Homologysingle-organism processHOM03D000197
GO:0006259IEAPLAZA HomologyDNA metabolic processHOM03D000197
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000197
GO:0006461IEAPLAZA Homologyprotein complex assemblyHOM03D000197
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT3G54560
GO:0010468ISOPLAZA Integrative Orthologyregulation of gene expressionAT3G54560

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0046982IEAInterProprotein heterodimerization activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT3G54560
GO:0046983IEAPLAZA Homologyprotein dimerization activityHOM03D000197
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000197
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000197
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000197

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAInterPronucleus
GO:0000786IEAInterPronucleosome
GO:0005730ISOPLAZA Tree-based OrthologynucleolusAT2G38810
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03D000197
GO:0005622IEAPLAZA HomologyintracellularHOM03D000197
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03D000197
GO:0032993IEAPLAZA Homologyprotein-DNA complexHOM03D000197
GO:0043226IEAPLAZA HomologyorganelleHOM03D000197
GO:0043228IEAPLAZA Homologynon-membrane-bounded organelleHOM03D000197
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03D000197
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03D000197
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000197
GO:0000785IEAPLAZA HomologychromatinHOM03D000197
GO:0044815IEAPLAZA HomologyDNA packaging complexHOM03D000197
GO:0005694IEAPLAZA HomologychromosomeHOM03D000197
GO:0043234IEAPLAZA Homologyprotein complexHOM03D000197
GO:0043232IEAPLAZA Homologyintracellular non-membrane-bounded organelleHOM03D000197
GO:0044464IEAPLAZA Homologycell partHOM03D000197
GO:0044427IEAPLAZA Homologychromosomal partHOM03D000197
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000197
GO:0044422IEAPLAZA Homologyorganelle partHOM03D000197
GO:0005623IEAPLAZA HomologycellHOM03D000197
GO:0044446IEAPLAZA Homologyintracellular organelle partHOM03D000197

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007125Histone core
IPR002119Histone H2A
IPR009072Histone-fold

Mapman id Description
28.1.3DNA.synthesis/chromatin structure.histone
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network