Gene: CRU_005G13250 (Capsella rubella)
Overview 
- Gene Identifier
- CRU_005G13250
- Transcript Identifier
- CRU_005G13250.1
- Gene Type
- Coding gene
- Location
- scaffold_5 : 7778121-7779017 : negative
Family
- Gene family
Descriptions
- Description (AnnoMine)
-
H2 finger protein ATL48
Description of best ortholog(s):

Identifiers
Identifier | Name |
---|---|
GeneName | Carubv10018581m.g |
id | PAC:20886974 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005515 | IEA | InterPro | protein binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0043169 | IEA | PLAZA Homology | cation binding | HOM03D000017 |
GO:0005488 | IEA | PLAZA Homology | binding | HOM03D000017 |
GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03D000017 |
GO:0046914 | IEA | PLAZA Homology | transition metal ion binding | HOM03D000017 |
GO:0046872 | IEA | PLAZA Homology | metal ion binding | HOM03D000017 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
Mapman id | Description |
---|---|
29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING |
No SignalP domains detected for this gene.