PLAZA 3.0 Dicots gene overview : CRU_005G10730

Gene: CRU_005G10730 (Capsella rubella)

Overview

Gene Identifier: CRU_005G10730
Transcript Identifier: CRU_005G10730.1
Gene Type: Coding gene
Location: scaffold_5 : 6707659-6710532 : positive

Family

Gene family: HOM03D000074
(1202 genes in 31 species)
specific family
Subfamily: ORTHO03D000242
(118 genes in 25 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): 2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
GeneName	Carubv10018691m.g
id	PAC:20886664

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	Genome Project	carbohydrate metabolic process
GO:0080167	ISO	PLAZA Tree-based Orthology	response to karrikin	AT1G60090
GO:0046283	ISO	PLAZA Tree-based Orthology	anthocyanin-containing compound metabolic process	AT4G27830
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000074
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000074
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000074

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004553	IEA	Genome Project	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	IEA	InterPro	catalytic activity
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000074
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03D000074

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005773	ISO	PLAZA Tree-based Orthology	vacuole	AT4G27830 AT3G62750
GO:0005777	ISO	PLAZA Tree-based Orthology	peroxisome	AT4G27820

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001360	Glycoside hydrolase, family 1
IPR013781	Glycoside hydrolase, catalytic domain
IPR017853	Glycoside hydrolase, superfamily
IPR018120	Glycoside hydrolase, family 1, active site

Mapman id	Description
26.3	misc.gluco-, galacto- and mannosidases

No SignalP domains detected for this gene.