Gene: CRU_005G01470 (Capsella rubella)

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Gene Identifier
CRU_005G01470
Transcript Identifier
CRU_005G01470.1
Gene Type
Coding gene
Location
scaffold_5 : 631684-633765 : positive

Family

Gene family
HOM03D000033
(1847 genes in 31 species)
specific family
Subfamily
ORTHO03D011953
(21 genes in 13 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
box ATP-dependent RNA helicase 18
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10016908m.g
idPAC:20888166

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Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEAGenome Projectnucleic acid binding
GO:0005524IEAGenome ProjectATP binding
GO:0008026IEAGenome ProjectATP-dependent helicase activity
GO:0004386IEAGenome Projecthelicase activity
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000033
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03D000033
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000033
GO:0042623IEAPLAZA HomologyATPase activity, coupledHOM03D000033
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000033
GO:0043167IEAPLAZA Homologyion bindingHOM03D000033
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000033
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000033
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000033
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03D000033
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000033
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000033
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03D000033
GO:0000166IEAPLAZA Homologynucleotide bindingHOM03D000033
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000033
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000033
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000033
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000033
GO:0016887IEAPLAZA HomologyATPase activityHOM03D000033
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000033
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000033
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000033
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000033
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000033
GO:0005488IEAPLAZA HomologybindingHOM03D000033
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000033
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000033
GO:0070035IEAPLAZA Homologypurine NTP-dependent helicase activityHOM03D000033

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR025313Domain of unknown function DUF4217
IPR001650Helicase, C-terminal
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR000629RNA helicase, ATP-dependent, DEAD-box, conserved site
IPR014014RNA helicase, DEAD-box type, Q motif

Mapman id Description
27.1.2RNA.processing.RNA helicase
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.