Gene: CRU_004G23050 (Capsella rubella)

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Gene Identifier
CRU_004G23050
Transcript Identifier
CRU_004G23050.1
Gene Type
Coding gene
Location
scaffold_4 : 12477472-12479323 : negative

Family

Gene family
HOM03D001241
(124 genes in 31 species)
specific family
Subfamily
ORTHO03D000986
(60 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine)
Transcription initiation factor IIB
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10023678m.g
idPAC:20902828

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006413IEAGenome Projecttranslational initiation
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0006352IEAGenome ProjectDNA-dependent transcription, initiation
GO:0080092ISOPLAZA Integrative Orthologyregulation of pollen tube growthAT2G41630
GO:0010183ISOPLAZA Integrative Orthologypollen tube guidanceAT2G41630
GO:0009960ISOPLAZA Integrative Orthologyendosperm developmentAT2G41630
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D001241

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003743IEAGenome Projecttranslation initiation factor activity
GO:0008270IEAGenome Projectzinc ion binding
GO:0017025IEAInterProTBP-class protein binding
GO:0008134IEAPLAZA Homologytranscription factor bindingHOM03D001241

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G41630 AT3G10330
GO:0005737ISOPLAZA Tree-based OrthologycytoplasmAT3G10330

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013763Cyclin-like
IPR000812Transcription factor TFIIB
IPR023486Transcription factor TFIIB, conserved site
IPR013150Transcription factor TFIIB, cyclin-like domain
IPR013137Zinc finger, TFIIB-type

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.