Gene: CRU_004G20490 (Capsella rubella)

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Gene Identifier
CRU_004G20490
Transcript Identifier
CRU_004G20490.1
Gene Type
Coding gene
Location
scaffold_4 : 11414654-11417437 : positive

Family

Gene family
HOM03D005050
(41 genes in 30 species)
specific family
Subfamily
ORTHO03D006124
(33 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine)
Ribosomal large subunit pseudouridine synthase B
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10023183m.g
idPAC:20902236

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0001522IEAGenome Projectpseudouridine synthesis
GO:0009451IEAGenome ProjectRNA modification
GO:0032544ISOPLAZA Integrative Orthologyplastid translationAT2G39140
GO:0000489ISOPLAZA Integrative Orthologymaturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)AT2G39140
GO:0000488ISOPLAZA Integrative Orthologymaturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)AT2G39140

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IEAGenome ProjectRNA binding
GO:0009982IEAGenome Projectpseudouridine synthase activity
GO:0016866IEAInterProintramolecular transferase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT2G39140
GO:0009501ISOPLAZA Integrative OrthologyamyloplastAT2G39140

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002942RNA-binding S4 domain
IPR020103Pseudouridine synthase, catalytic domain
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/F
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved site

Mapman id Description
29.1.30protein.aa activation.pseudouridylate synthase
No SignalP domains detected for this gene.