Gene: CRU_003G29140 (Capsella rubella)

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Gene Identifier
CRU_003G29140
Transcript Identifier
CRU_003G29140.1
Gene Type
Coding gene
Location
scaffold_3 : 12798891-12801002 : negative

Family

Gene family
HOM03D002701
(67 genes in 29 species)
specific family
Subfamily
ORTHO03D002216
(43 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Biosynthetic arginine decarboxylase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10013090m.g
idPAC:20898330

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008295IEAGenome Projectspermidine biosynthetic process
GO:0006527IEAGenome Projectarginine catabolic process
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldOS06G04070 AT2G16500 AT4G34710
GO:0048316ISOPLAZA Integrative Orthologyseed developmentAT2G16500 AT4G34710
GO:0006979ISOPLAZA Integrative Orthologyresponse to oxidative stressAT2G16500 AT4G34710
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT2G16500 AT4G34710
GO:0080167ISOPLAZA Tree-based Orthologyresponse to karrikinAT4G34710
GO:0009446ISOPLAZA Tree-based Orthologyputrescine biosynthetic processAT4G34710
GO:0009753ISOPLAZA Tree-based Orthologyresponse to jasmonic acidAT4G34710
GO:0009737ISOPLAZA Tree-based Orthologyresponse to abscisic acidAT4G34710
GO:0009611ISOPLAZA Tree-based Orthologyresponse to woundingAT4G34710

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003824IEAGenome Projectcatalytic activity
GO:0008792IEAGenome Projectarginine decarboxylase activity

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000183Ornithine/DAP/Arg decarboxylase
IPR002985Arginine decarboxylase
IPR022644Orn/DAP/Arg decarboxylase 2, N-terminal
IPR009006Alanine racemase/group IV decarboxylase, C-terminal
IPR022653Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site
IPR022643Orn/DAP/Arg decarboxylase 2, C-terminal
IPR022657Orn/DAP/Arg decarboxylase 2, conserved site

Mapman id Description
22.1.3polyamine metabolism.synthesis.arginine decarboxylase
No SignalP domains detected for this gene.