Gene: CRU_003G05560 (Capsella rubella)

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Gene Identifier
CRU_003G05560
Transcript Identifier
CRU_003G05560.1
Gene Type
Coding gene
Location
scaffold_3 : 1965336-1968279 : negative

Family

Gene family
HOM03D001347
(115 genes in 31 species)
specific family
Subfamily
ORTHO03D000753
(68 genes in 30 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10013287m.g
idPAC:20898367

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114IEAGenome Projectoxidation-reduction process
GO:0008652IEAGenome Projectcellular amino acid biosynthetic process
GO:0019632IEAInterProshikimate metabolic process
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT3G06350

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0009055IEAGenome Projectelectron carrier activity
GO:0016491IEAGenome Projectoxidoreductase activity
GO:0003855IEAGenome Project3-dehydroquinate dehydratase activity
GO:0004764IEAGenome Projectshikimate 3-dehydrogenase (NADP+) activity
GO:0004455IEAGenome Projectketol-acid reductoisomerase activity
GO:0050661IEAInterProNADP binding
GO:0003824IEAInterProcatalytic activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G06350
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT3G06350

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011342Shikimate dehydrogenase
IPR016040NAD(P)-binding domain
IPR001381Dehydroquinase class I
IPR013708Shikimate dehydrogenase substrate binding, N-terminal
IPR013785Aldolase-type TIM barrel
IPR022893Shikimate, quinate/shikimate dehydrogenase
IPR006151Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase

Mapman id Description
13.1.6.1.10amino acid metabolism.synthesis.aromatic aa.chorismate.dehydroquinate/shikimate dehydrogenase
No SignalP domains detected for this gene.