Gene: CRU_003G01660 (Capsella rubella)

Overview top

Gene Identifier
CRU_003G01660
Transcript Identifier
CRU_003G01660.1
Gene Type
Coding gene
Location
scaffold_3 : 578344-580485 : negative

Family

Gene family
HOM03D005633
(38 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine)
Tyrosine--tRNA ligase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10013389m.g
idPAC:20898187

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006418IEAGenome ProjecttRNA aminoacylation for protein translation
GO:0006412IEAGenome Projecttranslation
GO:0006437IEAGenome Projecttyrosyl-tRNA aminoacylation
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT3G02660

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAGenome Projectnucleotide binding
GO:0004812IEAGenome Projectaminoacyl-tRNA ligase activity
GO:0005524IEAGenome ProjectATP binding
GO:0003723IEAGenome ProjectRNA binding
GO:0004831IEAGenome Projecttyrosine-tRNA ligase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT3G02660
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT3G02660
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G02660

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002307Tyrosine-tRNA ligase
IPR002942RNA-binding S4 domain
IPR014729Rossmann-like alpha/beta/alpha sandwich fold
IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
IPR024088Tyrosine-tRNA ligase, bacterial-type
IPR002305Aminoacyl-tRNA synthetase, class Ic
IPR024107Tyrosine-tRNA ligase, bacterial-type, type 1

Mapman id Description
29.1.1protein.aa activation.tyrosine-tRNA ligase
No SignalP domains detected for this gene.