Gene: CRU_001G35200 (Capsella rubella)

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Gene Identifier
CRU_001G35200
Transcript Identifier
CRU_001G35200.1
Gene Type
Coding gene
Location
scaffold_1 : 16413677-16416646 : positive

Family

Gene family
HOM03D000052
(1449 genes in 30 species)
specific family
Subfamily
ORTHO03D000332
(100 genes in 28 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Polygalacturonase At1g48100
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10008991m.g
idPAC:20892303

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAGenome Projectcarbohydrate metabolic process
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000052
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000052
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000052

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAGenome Projectpolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000052
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03D000052
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000052
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03D000052

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012334Pectin lyase fold
IPR006626Parallel beta-helix repeat
IPR000743Glycoside hydrolase, family 28
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
No SignalP domains detected for this gene.