PLAZA 3.0 Dicots gene overview : CRU_001G31580

Gene: CRU_001G31580 (Capsella rubella)

Overview

Gene Identifier: CRU_001G31580
Transcript Identifier: CRU_001G31580.1
Gene Type: Coding gene
Location: scaffold_1 : 12556210-12558293 : negative

Family

Gene family: HOM03D000428
(294 genes in 29 species)
specific family
Subfamily: ORTHO03D000201
(130 genes in 29 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Alkaline/neutral invertase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
GeneName	Carubv10012014m.g
id	PAC:20893028

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0048364	ISO	PLAZA Integrative Orthology	root development	AT4G09510 AT1G35580
GO:0005987	ISO	PLAZA Integrative Orthology	sucrose catabolic process	AT4G09510 AT1G35580
GO:0042542	ISO	PLAZA Integrative Orthology	response to hydrogen peroxide	AT1G35580
GO:0006520	ISO	PLAZA Integrative Orthology	cellular amino acid metabolic process	AT1G35580
GO:0005975	ISO	PLAZA Integrative Orthology	carbohydrate metabolic process	AT1G35580

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0033926	IEA	InterPro	glycopeptide alpha-N-acetylgalactosaminidase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0004564	ISO	PLAZA Integrative Orthology	beta-fructofuranosidase activity	AT4G09510 AT1G35580
GO:0004575	ISO	PLAZA Integrative Orthology	sucrose alpha-glucosidase activity	AT1G35580
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G35580
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03D000428
GO:0004553	IEA	PLAZA Homology	hydrolase activity, hydrolyzing O-glycosyl compounds	HOM03D000428

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT1G35580
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT1G35580
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G35580
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G35580

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR008928	Six-hairpin glycosidase-like
IPR024746	Glycosyl hydrolase family 100

Mapman id	Description
2.2.1.3.1	major CHO metabolism.degradation.sucrose.invertases.neutral

No SignalP domains detected for this gene.