Gene: CRU_001G07070 (Capsella rubella)

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Gene Identifier
CRU_001G07070
Transcript Identifier
CRU_001G07070.1
Gene Type
Coding gene
Location
scaffold_1 : 2616262-2621066 : negative

Family

Gene family
HOM03D001767
(94 genes in 31 species)
specific family
Subfamily
ORTHO03D011393
(23 genes in 20 species)
specific family

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Descriptions

Description (AnnoMine)
DNA ligase 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10008341m.g
idPAC:20890213

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006281IEAGenome ProjectDNA repair
GO:0006310IEAGenome ProjectDNA recombination
GO:0006260IEAInterProDNA replication
GO:0051103IEAInterProDNA ligation involved in DNA repair
GO:0006302ISOPLAZA Integrative Orthologydouble-strand break repairAT1G08130
GO:0000012ISOPLAZA Integrative Orthologysingle strand break repairAT1G08130

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003910IEAGenome ProjectDNA ligase (ATP) activity
GO:0005524IEAGenome ProjectATP binding
GO:0003677IEAGenome ProjectDNA binding
GO:0003909IEAInterProDNA ligase activity
GO:0016886IEAPLAZA Homologyligase activity, forming phosphoric ester bondsHOM03D001767

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT1G08130
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G08130

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012310DNA ligase, ATP-dependent, central
IPR012340Nucleic acid-binding, OB-fold
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR000977DNA ligase, ATP-dependent

Mapman id Description
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.