Gene: CRU_001G04860 (Capsella rubella)

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Gene Identifier
CRU_001G04860
Transcript Identifier
CRU_001G04860.1
Gene Type
Coding gene
Location
scaffold_1 : 1829810-1836654 : positive

Family

Gene family
HOM03D000653
(209 genes in 31 species)
specific family
Subfamily
ORTHO03D011611
(22 genes in 17 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
lysine N-methyltransferase ATX2
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10008150m.g
idPAC:20889285

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010093ISOPLAZA Tree-based Orthologyspecification of floral organ identityAT2G31650
GO:0009909ISOPLAZA Tree-based Orthologyregulation of flower developmentAT2G31650
GO:0051568ISOPLAZA Integrative Orthologyhistone H3-K4 methylationAT1G05830 AT2G31650
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT1G05830 AT2G31650

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0003677IEAGenome ProjectDNA binding
GO:0008270IEAInterProzinc ion binding
GO:0044212ISOPLAZA Tree-based Orthologytranscription regulatory region DNA bindingAT2G31650
GO:0010314ISOPLAZA Tree-based Orthologyphosphatidylinositol-5-phosphate bindingAT2G31650
GO:0042800ISOPLAZA Integrative Orthologyhistone methyltransferase activity (H3-K4 specific)AT1G05830

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0005886ISOPLAZA Tree-based Orthologyplasma membraneAT2G31650
GO:0005737ISOPLAZA Tree-based OrthologycytoplasmAT2G31650

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001214SET domain
IPR003889FY-rich, C-terminal
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR003888FY-rich, N-terminal
IPR003616Post-SET domain
IPR019787Zinc finger, PHD-finger
IPR000313PWWP domain
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
27.3.69RNA.regulation of transcription.SET-domain transcriptional regulator family
No SignalP domains detected for this gene.