Gene: CRU_001G03960 (Capsella rubella)

Overview top

Gene Identifier
CRU_001G03960
Transcript Identifier
CRU_001G03960.1
Gene Type
Coding gene
Location
scaffold_1 : 1517368-1519342 : negative

Family

Gene family
HOM03D005890
(37 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine)
transcription factor IIH subunit 2
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10009246m.g
idPAC:20889936

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006281IEAGenome ProjectDNA repair
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0006289IEAInterPronucleotide-excision repair
GO:0006351IEAInterProtranscription, DNA-templated
GO:0006357ISOPLAZA Integrative Orthologyregulation of transcription from RNA polymerase II promoterAT1G05055

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEAGenome Projectzinc ion binding
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0000439IEAInterProcore TFIIH complex
GO:0005675ISOPLAZA Integrative Orthologyholo TFIIH complexAT1G05055
GO:0000441IEAPLAZA HomologySSL2-core TFIIH complexHOM03D005890
GO:0032806IEAPLAZA Homologycarboxy-terminal domain protein kinase complexHOM03D005890

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002035von Willebrand factor, type A
IPR001841Zinc finger, RING-type
IPR004595TFIIH C1-like domain
IPR012170TFIIH subunit Ssl1/p44
IPR007198Ssl1-like

Mapman id Description
27.3.99RNA.regulation of transcription.unclassified
No SignalP domains detected for this gene.