Gene: CRU_001G02170 (Capsella rubella)

Overview top

Gene Identifier
CRU_001G02170
Transcript Identifier
CRU_001G02170.1
Gene Type
Coding gene
Location
scaffold_1 : 814199-818215 : positive

Family

Gene family
HOM03D006423
(34 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine)
transcription factor complex helicase XPD subunit
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10008351m.g
idPAC:20889864

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006289IEAGenome Projectnucleotide-excision repair
GO:0006139IEAInterPronucleobase-containing compound metabolic process
GO:0009411ISOPLAZA Integrative Orthologyresponse to UVAT1G03190
GO:0009408ISOPLAZA Integrative Orthologyresponse to heatAT1G03190
GO:0006281ISOPLAZA Integrative OrthologyDNA repairAT1G03190

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004003IEAGenome ProjectATP-dependent DNA helicase activity
GO:0003677IEAGenome ProjectDNA binding
GO:0005524IEAGenome ProjectATP binding
GO:0016787IEAGenome Projecthydrolase activity
GO:0016818IEAGenome Projecthydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008026IEAInterProATP-dependent helicase activity
GO:0016817IEAInterProhydrolase activity, acting on acid anhydrides
GO:0003676IEAInterPronucleic acid binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G03190

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR001945Xeroderma pigmentosum group D protein
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
IPR006554Helicase-like, DEXD box c2 type
IPR006555ATP-dependent helicase, C-terminal
IPR010643Domain of unknown function DUF1227
IPR013020DNA helicase (DNA repair), Rad3 type
IPR014013Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type
IPR010614DEAD2

Mapman id Description
28.2DNA.repair
No SignalP domains detected for this gene.