Gene: CRU_001G01060 (Capsella rubella)

Overview top

Gene Identifier
CRU_001G01060
Transcript Identifier
CRU_001G01060.1
Gene Type
Coding gene
Location
scaffold_1 : 413945-421544 : negative

Family

Gene family
HOM03D000293
(389 genes in 30 species)
specific family
Subfamily
ORTHO03D013716
(16 genes in 15 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
Endoribonuclease Dicer homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10008073m.g
idPAC:20889447

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396IEAGenome ProjectRNA processing
GO:0016075IEAInterProrRNA catabolic process
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT1G01040
GO:0009880ISOPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:2000034ISOPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0010599ISOPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT1G01040
GO:0009616ISOPLAZA Integrative Orthologyvirus induced gene silencingAT1G01040
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G01040
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0035279ISOPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:0000910ISOPLAZA Integrative OrthologycytokinesisAT1G01040
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT1G01040
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000293
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT1G01040 OS03G02970
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT1G01040
GO:0007275ISOPLAZA Integrative Orthologymulticellular organismal developmentOS03G02970

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003725IEAGenome Projectdouble-stranded RNA binding
GO:0003676IEAGenome Projectnucleic acid binding
GO:0005524IEAGenome ProjectATP binding
GO:0008026IEAGenome ProjectATP-dependent helicase activity
GO:0004386IEAGenome Projecthelicase activity
GO:0003723IEAGenome ProjectRNA binding
GO:0004525IEAGenome Projectribonuclease III activity
GO:0005515IEAGenome Projectprotein binding
GO:0016891IEAGenome Projectendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003677IEAGenome ProjectDNA binding
GO:0016787IEAGenome Projecthydrolase activity
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03D000293
GO:0016788IEAPLAZA Homologyhydrolase activity, acting on ester bondsHOM03D000293
GO:0004540IEAPLAZA Homologyribonuclease activityHOM03D000293
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03D000293
GO:0004518IEAPLAZA Homologynuclease activityHOM03D000293
GO:0004519IEAPLAZA Homologyendonuclease activityHOM03D000293

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAGenome Projectintracellular
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT1G01040
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G01040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR014720Double-stranded RNA-binding domain
IPR000999Ribonuclease III domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR001650Helicase, C-terminal
IPR005034Dicer dimerisation domain
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR006935Helicase/UvrB domain
IPR011907Ribonuclease III
IPR003100Argonaute/Dicer protein, PAZ domain

Mapman id Description
27.1.20RNA.processing.degradation dicer
No SignalP domains detected for this gene.