Gene: CP00271G00020 (Carica papaya)

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Gene Identifier
CP00271G00020
Transcript Identifier
CP00271G00020.1
Gene Type
Coding gene
Location
supercontig_271 : 6348-12990 : positive

Family

Gene family
HOM03D000511
(254 genes in 31 species)
specific family
Subfamily
ORTHO03D023848
(5 genes in 5 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
polymerase V subunit 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_271.2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEAGenome Projecttranscription, DNA-templated
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G40030
GO:0035194ISOPLAZA Integrative Orthologyposttranscriptional gene silencing by RNAAT2G40030
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G40030

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003899IEAGenome ProjectDNA-directed RNA polymerase activity
GO:0003677IEAGenome ProjectDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G40030
GO:0046914IEAPLAZA Homologytransition metal ion bindingHOM03D000511
GO:0034062IEAPLAZA HomologyRNA polymerase activityHOM03D000511
GO:0016779IEAPLAZA Homologynucleotidyltransferase activityHOM03D000511

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G40030
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G40030
GO:0030880ISOPLAZA Integrative OrthologyRNA polymerase complexAT2G40030
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G40030
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT2G40030
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT2G40030

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007066RNA polymerase Rpb1, domain 3
IPR007081RNA polymerase Rpb1, domain 5
IPR000722RNA polymerase, alpha subunit
IPR006592RNA polymerase, N-terminal

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.