PLAZA 3.0 Dicots gene overview : CP00128G00240

Gene: CP00128G00240 (Carica papaya)

Overview

Gene Identifier: CP00128G00240
Transcript Identifier: CP00128G00240.1
Gene Type: Coding gene
Location: supercontig_128 : 186490-190420 : positive

Family

Gene family: HOM03D004086
(47 genes in 29 species)
specific family
Subfamily: ORTHO03D004127
(36 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine): binding protein-associated factor RNA polymerase I subunit B

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_128.24

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT2G02955

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0001164	IEA	PLAZA Homology	RNA polymerase I CORE element sequence-specific DNA binding	HOM03D004086
GO:0001167	IEA	PLAZA Homology	sequence-specific DNA binding RNA polymerase I transcription factor activity	HOM03D004086
GO:0001163	IEA	PLAZA Homology	RNA polymerase I regulatory region sequence-specific DNA binding	HOM03D004086
GO:0001013	IEA	PLAZA Homology	RNA polymerase I regulatory region DNA binding	HOM03D004086
GO:0001134	IEA	PLAZA Homology	transcription factor recruiting transcription factor activity	HOM03D004086
GO:0001169	IEA	PLAZA Homology	RNA polymerase I CORE element sequence-specific DNA binding transcription factor activity	HOM03D004086
GO:0001082	IEA	PLAZA Homology	RNA polymerase I transcription factor binding transcription factor activity	HOM03D004086
GO:0001186	IEA	PLAZA Homology	RNA polymerase I transcription factor recruiting transcription factor activity	HOM03D004086
GO:0001187	IEA	PLAZA Homology	RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity	HOM03D004086

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR021752	Transcription initiation factor Rrn7

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.