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WorkbenchGene: CP00040G00310 (Carica papaya)
Overview 
- Gene Identifier
- CP00040G00310
- Transcript Identifier
- CP00040G00310.1
- Gene Type
- Coding gene
- Location
- supercontig_40 : 600066-601502 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description (AnnoMine)
-
Putative RING-H2 finger protein ATL12
Description of best ortholog(s):
Identifiers
| Identifier | Name |
|---|---|
| pid | evm.TU.supercontig_40.31 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT4G28890 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005515 | IEA | Genome Project | protein binding | |
| GO:0008270 | IEA | Genome Project | zinc ion binding | |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein ligase activity | AT4G28890 |
| GO:0043169 | IEA | PLAZA Homology | cation binding | HOM03D000017 |
| GO:0005488 | IEA | PLAZA Homology | binding | HOM03D000017 |
| GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03D000017 |
| GO:0046914 | IEA | PLAZA Homology | transition metal ion binding | HOM03D000017 |
| GO:0046872 | IEA | PLAZA Homology | metal ion binding | HOM03D000017 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.