PLAZA 3.0 Dicots gene overview : CP00006G02690

Gene: CP00006G02690 (Carica papaya)

Overview

Gene Identifier: CP00006G02690
Transcript Identifier: CP00006G02690.1
Gene Type: Coding gene
Location: supercontig_6 : 2108234-2118485 : positive

Family

Gene family: HOM03D000644
(212 genes in 31 species)
specific family
Subfamily: ORTHO03D000289
(109 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine): Lysosomal alpha-mannosidase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_6.270

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006013	IEA	Genome Project	mannose metabolic process
GO:0005975	IEA	Genome Project	carbohydrate metabolic process
GO:0019318	IEA	PLAZA Homology	hexose metabolic process	HOM03D000644
GO:0005996	IEA	PLAZA Homology	monosaccharide metabolic process	HOM03D000644

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0015923	IEA	Genome Project	mannosidase activity
GO:0003824	IEA	Genome Project	catalytic activity
GO:0004559	IEA	Genome Project	alpha-mannosidase activity
GO:0004553	IEA	Genome Project	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246	IEA	Genome Project	carbohydrate binding
GO:0008270	IEA	Genome Project	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0048046	ISO	PLAZA Integrative Orthology	apoplast	AT5G13980
GO:0009505	ISO	PLAZA Integrative Orthology	plant-type cell wall	AT5G13980 AT3G26720
GO:0005774	ISO	PLAZA Integrative Orthology	vacuolar membrane	AT5G13980 AT3G26720
GO:0005773	ISO	PLAZA Integrative Orthology	vacuole	AT5G13980 AT3G26720
GO:0005618	ISO	PLAZA Integrative Orthology	cell wall	AT5G13980

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013780	Glycosyl hydrolase, family 13, all-beta
IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel
IPR011013	Galactose mutarotase-like domain
IPR011682	Glycosyl hydrolase family 38, C-terminal
IPR015341	Glycoside hydrolase, family 38, central domain
IPR000602	Glycoside hydrolase family 38, N-terminal domain
IPR027291	Glycoside hydrolase 38/57, N-terminal domain

No MapMan annotations defined for this gene.

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network