Gene: CM00006G00040 (Cucumis melo)

Overview top

Gene Identifier
CM00006G00040
Transcript Identifier
CM00006G00040.1
Gene Type
Coding gene
Location
CM3.5_scaffold00006 : 28471-33297 : negative

Family

Gene family
HOM03D000293
(389 genes in 30 species)
specific family
Subfamily
ORTHO03D004019
(36 genes in 23 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
Endoribonuclease Dicer homolog 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameMELO3C005929
idMELO3C005929T1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396IEAInterProRNA processing
GO:0007275ISOPLAZA Integrative Orthologymulticellular organismal developmentOS03G02970
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAOS03G02970 AT1G01040
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT1G01040
GO:2000034ISOPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0009880ISOPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:0010599ISOPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT1G01040
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT1G01040
GO:0009616ISOPLAZA Integrative Orthologyvirus induced gene silencingAT1G01040
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G01040
GO:0035279ISOPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:0000910ISOPLAZA Integrative OrthologycytokinesisAT1G01040
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT1G01040
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000293

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004525IEAInterProribonuclease III activity
GO:0003723IEAInterProRNA binding
GO:0003725ISOPLAZA Integrative Orthologydouble-stranded RNA bindingAT1G01040
GO:0016891IEAPLAZA Homologyendoribonuclease activity, producing 5'-phosphomonoestersHOM03D000293
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03D000293
GO:0016788IEAPLAZA Homologyhydrolase activity, acting on ester bondsHOM03D000293
GO:0004540IEAPLAZA Homologyribonuclease activityHOM03D000293
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03D000293
GO:0004518IEAPLAZA Homologynuclease activityHOM03D000293
GO:0004519IEAPLAZA Homologyendonuclease activityHOM03D000293

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT1G01040
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G01040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000999Ribonuclease III domain
IPR014720Double-stranded RNA-binding domain
IPR003100Argonaute/Dicer protein, PAZ domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.