PLAZA 3.0 Dicots gene overview : CM00001G00060

Gene: CM00001G00060 (Cucumis melo)

Overview

Gene Identifier: CM00001G00060
Transcript Identifier: CM00001G00060.1
Gene Type: Coding gene
Location: CM3.5_scaffold00001 : 42658-43131 : positive

Family

Gene family: HOM03D000044
(1608 genes in 28 species)
specific family
Subfamily: ORTHO03D031418
(4 genes in 2 species)
specific family

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Descriptions

Description (AnnoMine): Retrovirus-related Pol polyprotein from transposon 297

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
GeneName	MELO3C001918
id	MELO3C001918T1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006259	IEA	PLAZA Homology	DNA metabolic process	HOM03D000044

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA	PLAZA Homology	nucleic acid binding	HOM03D000044

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.