PLAZA 3.0 Dicots gene overview : CL00G00180

Gene: CL00G00180 (Citrullus lanatus)

Overview

Gene Identifier: CL00G00180
Transcript Identifier: CL00G00180.1
Gene Type: Coding gene
Location: Chr0 : 615901-616923 : negative

Family

Gene family: HOM03D000908
(161 genes in 30 species)
specific family
Subfamily: ORTHO03D002505
(41 genes in 26 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): S-adenosylmethionine decarboxylase proenzyme

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
GeneName	Cla000039

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008295	IEA	InterPro	spermidine biosynthetic process
GO:0006597	IEA	InterPro	spermine biosynthetic process
GO:0006596	IEA	PLAZA Homology	polyamine biosynthetic process	HOM03D000908
GO:0006595	IEA	PLAZA Homology	polyamine metabolic process	HOM03D000908
GO:0044106	IEA	PLAZA Homology	cellular amine metabolic process	HOM03D000908
GO:0006576	IEA	PLAZA Homology	cellular biogenic amine metabolic process	HOM03D000908
GO:0042401	IEA	PLAZA Homology	cellular biogenic amine biosynthetic process	HOM03D000908
GO:0008215	IEA	PLAZA Homology	spermine metabolic process	HOM03D000908
GO:0009308	IEA	PLAZA Homology	amine metabolic process	HOM03D000908
GO:0008216	IEA	PLAZA Homology	spermidine metabolic process	HOM03D000908
GO:0009309	IEA	PLAZA Homology	amine biosynthetic process	HOM03D000908

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004014	IEA	InterPro	adenosylmethionine decarboxylase activity
GO:0016829	IEA	PLAZA Homology	lyase activity	HOM03D000908
GO:0016831	IEA	PLAZA Homology	carboxy-lyase activity	HOM03D000908
GO:0016830	IEA	PLAZA Homology	carbon-carbon lyase activity	HOM03D000908

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR018167	S-adenosylmethionine decarboxylase subgroup
IPR016067	S-adenosylmethionine decarboxylase, core
IPR001985	S-adenosylmethionine decarboxylase
IPR018166	S-adenosylmethionine decarboxylase, conserved site

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.