Gene: BV7G05370 (Beta vulgaris)

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Gene Identifier
BV7G05370
Transcript Identifier
BV7G05370.1
Gene Type
Coding gene
Location
Bvchr7.sca021 : 6469915-6476037 : positive

Family

Gene family
HOM03D001112
(138 genes in 31 species)
specific family
Subfamily
ORTHO03D002712
(40 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine)
sigma factor SigA
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameBv7_175990_yjeg
pidBv7_175990_yjeg.t2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006801IEAGenome Projectsuperoxide metabolic process
GO:0009637IEAGenome Projectresponse to blue light
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0055114IEAGenome Projectoxidation-reduction process
GO:0006352IEAGenome ProjectDNA-dependent transcription, initiation
GO:0010114IEAGenome Projectresponse to red light
GO:2001141ISOPLAZA Integrative Orthologyregulation of RNA biosynthetic processAT1G08540
GO:0006399ISOPLAZA Integrative OrthologytRNA metabolic processAT1G08540
GO:0009658ISOPLAZA Integrative Orthologychloroplast organizationAT1G08540
GO:0071482ISOPLAZA Integrative Orthologycellular response to light stimulusAT1G08540

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004784IEAGenome Projectsuperoxide dismutase activity
GO:0003677IEAGenome ProjectDNA binding
GO:0046872IEAGenome Projectmetal ion binding
GO:0016987IEAGenome Projectsigma factor activity
GO:0003700IEAGenome Projectsequence-specific DNA binding transcription factor activity
GO:0001053ISOPLAZA Integrative Orthologyplastid sigma factor activityAT1G08540
GO:0000988IEAPLAZA Homologyprotein binding transcription factor activityHOM03D001112
GO:0000990IEAPLAZA Homologycore RNA polymerase binding transcription factor activityHOM03D001112
GO:0000996IEAPLAZA Homologycore DNA-dependent RNA polymerase binding promoter specificity activityHOM03D001112

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IEAGenome Projectchloroplast
GO:0009536ISOPLAZA Integrative OrthologyplastidOS11G26160 OS03G16430
GO:0005739ISOPLAZA Integrative OrthologymitochondrionOS03G16430

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000943RNA polymerase sigma-70
IPR014284RNA polymerase sigma-70 like domain
IPR013325RNA polymerase sigma factor, region 2
IPR007627RNA polymerase sigma-70 region 2
IPR013324RNA polymerase sigma factor, region 3/4
IPR011991Winged helix-turn-helix DNA-binding domain
IPR007624RNA polymerase sigma-70 region 3
IPR007630RNA polymerase sigma-70 region 4
IPR019831Manganese/iron superoxide dismutase, N-terminal

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.