Gene: BV6G07240 (Beta vulgaris)

Overview top

Gene Identifier
BV6G07240
Transcript Identifier
BV6G07240.1
Gene Type
Coding gene
Location
Bvchr6.sca003 : 753482-758444 : negative

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameBv6_129180_pceq
pidBv6_129180_pceq.t1

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010161IEAGenome Projectred light signaling pathway
GO:0007600IEAGenome Projectsensory perception
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0017006IEAGenome Projectprotein-tetrapyrrole linkage
GO:0009585IEAGenome Projectred, far-red light phototransduction
GO:0000160IEAGenome Projectphosphorelay signal transduction system
GO:0046685IEAGenome Projectresponse to arsenic-containing substance
GO:0018106IEAGenome Projectpeptidyl-histidine phosphorylation
GO:0006351IEAGenome Projecttranscription, DNA-templated
GO:0010201IEAGenome Projectresponse to continuous far red light stimulus by the high-irradiance response system
GO:0018298IEAGenome Projectprotein-chromophore linkage
GO:0009630IEAGenome Projectgravitropism
GO:0010203IEAGenome Projectresponse to very low fluence red light stimulus
GO:0009638IEAGenome Projectphototropism
GO:0009584IEAInterProdetection of visible light
GO:0007165IEAInterProsignal transduction
GO:0017148ISOPLAZA Integrative Orthologynegative regulation of translationAT1G09570
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT1G09570
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008020IEAGenome ProjectG-protein coupled photoreceptor activity
GO:0005524IEAGenome ProjectATP binding
GO:0009883IEAGenome Projectred or far-red light photoreceptor activity
GO:0042803IEAGenome Projectprotein homodimerization activity
GO:0000155IEAGenome Projectphosphorelay sensor kinase activity
GO:0005515IEAInterProprotein binding
GO:0004871IEAInterProsignal transducer activity
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT1G09570
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT1G09570
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAGenome Projectmembrane
GO:0005737IEAGenome Projectcytoplasm
GO:0016607IEAGenome Projectnuclear speck
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT1G09570
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G09570

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001294Phytochrome
IPR000014PAS domain
IPR013654PAS fold-2
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR003018GAF domain
IPR000700PAS-associated, C-terminal
IPR005467Signal transduction histidine kinase, core
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR013767PAS fold
IPR016132Phytochrome chromophore attachment domain
IPR013516Phytochrome chromophore binding site
IPR013515Phytochrome, central region

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.