Gene: BV4G13620 (Beta vulgaris)

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Gene Identifier
BV4G13620
Transcript Identifier
BV4G13620.1
Gene Type
Coding gene
Location
Bvchr4.sca001 : 2568728-2572300 : negative

Family

Gene family
HOM03D004481
(44 genes in 30 species)
specific family
Subfamily
ORTHO03D004280
(36 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine)
Putative DNA ligase 4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameBv4_073680_cyaq
pidBv4_073680_cyaq.t1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010165IEAGenome Projectresponse to X-ray
GO:0006281IEAGenome ProjectDNA repair
GO:0006260IEAGenome ProjectDNA replication
GO:0006302IEAGenome Projectdouble-strand break repair
GO:0051103IEAGenome ProjectDNA ligation involved in DNA repair
GO:0006310IEAGenome ProjectDNA recombination
GO:0000723ISOPLAZA Integrative Orthologytelomere maintenanceAT5G57160
GO:0015074ISOPLAZA Integrative OrthologyDNA integrationAT5G57160
GO:0006974ISOPLAZA Integrative Orthologycellular response to DNA damage stimulusAT5G57160

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0005524IEAGenome ProjectATP binding
GO:0003910IEAGenome ProjectDNA ligase (ATP) activity
GO:0046872IEAGenome Projectmetal ion binding
GO:0005515IEAGenome Projectprotein binding
GO:0003909IEAGenome ProjectDNA ligase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0005622IEAGenome Projectintracellular
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT5G57160
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G57160

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001357BRCT domain
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012310DNA ligase, ATP-dependent, central
IPR016059DNA ligase, ATP-dependent, conserved site

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.