Gene: BV1G03940 (Beta vulgaris)

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Gene Identifier
BV1G03940
Transcript Identifier
BV1G03940.1
Gene Type
Coding gene
Location
Bvchr1.sca001 : 2014042-2026773 : positive

Family

Gene family
HOM03D000293
(389 genes in 30 species)
specific family
Subfamily
ORTHO03D004019
(36 genes in 23 species)
specific family

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Descriptions

Description (AnnoMine)
Endoribonuclease Dicer homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameBv1_001950_imjw
pidBv1_001950_imjw.t1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396IEAGenome ProjectRNA processing
GO:0009616IEAGenome Projectvirus induced gene silencing
GO:0010267IEAGenome Projectproduction of ta-siRNAs involved in RNA interference
GO:0010228IEAGenome Projectvegetative to reproductive phase transition of meristem
GO:0009880IEAGenome Projectembryonic pattern specification
GO:2000034IEAGenome Projectregulation of seed maturation
GO:0000910IEAGenome Projectcytokinesis
GO:0031053IEAGenome Projectprimary miRNA processing
GO:0009908IEAGenome Projectflower development
GO:0035279IEAGenome ProjectmRNA cleavage involved in gene silencing by miRNA
GO:0010599IEAGenome Projectproduction of lsiRNA involved in RNA interference
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAOS03G02970 AT1G01040
GO:0007275ISOPLAZA Integrative Orthologymulticellular organismal developmentOS03G02970
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT1G01040
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT1G01040
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000293

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IEAGenome ProjectRNA binding
GO:0003677IEAGenome ProjectDNA binding
GO:0005524IEAGenome ProjectATP binding
GO:0004386IEAGenome Projecthelicase activity
GO:0003725IEAGenome Projectdouble-stranded RNA binding
GO:0008026IEAGenome ProjectATP-dependent helicase activity
GO:0016891IEAGenome Projectendoribonuclease activity, producing 5'-phosphomonoesters
GO:0005515IEAGenome Projectprotein binding
GO:0004525IEAGenome Projectribonuclease III activity
GO:0003676IEAGenome Projectnucleic acid binding
GO:0046872IEAGenome Projectmetal ion binding
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03D000293
GO:0016788IEAPLAZA Homologyhydrolase activity, acting on ester bondsHOM03D000293
GO:0004540IEAPLAZA Homologyribonuclease activityHOM03D000293
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03D000293
GO:0004518IEAPLAZA Homologynuclease activityHOM03D000293
GO:0004519IEAPLAZA Homologyendonuclease activityHOM03D000293

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0010445IEAGenome Projectnuclear dicing body
GO:0005622IEAGenome Projectintracellular
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G01040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003100Argonaute/Dicer protein, PAZ domain
IPR000999Ribonuclease III domain
IPR014720Double-stranded RNA-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR005034Dicer dimerisation domain
IPR001650Helicase, C-terminal
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR014001Helicase, superfamily 1/2, ATP-binding domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.