Gene: BR10G09880 (Brassica rapa)

Overview top

Gene Identifier
BR10G09880
Transcript Identifier
BR10G09880.1
Gene Type
Coding gene
Location
A10 : 7503076-7505519 : positive

Family

Gene family
HOM03D001110
(138 genes in 31 species)
specific family
Subfamily
ORTHO03D010179
(26 genes in 19 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Asparagine--tRNA ligase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
protein_idBra002799

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006421IEAInterProasparaginyl-tRNA aminoacylation
GO:0006418IEAInterProtRNA aminoacylation for protein translation
GO:0043038IEAPLAZA Homologyamino acid activationHOM03D001110
GO:0043039IEAPLAZA HomologytRNA aminoacylationHOM03D001110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAInterPronucleotide binding
GO:0004816IEAInterProasparagine-tRNA ligase activity
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAInterProATP binding
GO:0004812IEAInterProaminoacyl-tRNA ligase activity
GO:0016875IEAPLAZA Homologyligase activity, forming carbon-oxygen bondsHOM03D001110
GO:0016876IEAPLAZA Homologyligase activity, forming aminoacyl-tRNA and related compoundsHOM03D001110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAInterProcytoplasm
GO:0005829ISOPLAZA Integrative OrthologycytosolAT1G70980

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009068S15/NS1, RNA-binding
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR004522Asparagine-tRNA ligase
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR012340Nucleic acid-binding, OB-fold
IPR000738WHEP-TRS
IPR006195Aminoacyl-tRNA synthetase, class II
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like

Mapman id Description
29.1.22protein.aa activation.asparagine-tRNA ligase
No SignalP domains detected for this gene.