PLAZA 3.0 Dicots gene overview : BR09G22500

Gene: BR09G22500 (Brassica rapa)

Overview

Gene Identifier: BR09G22500
Transcript Identifier: BR09G22500.1
Gene Type: Coding gene
Location: A09 : 15879669-15880106 : positive

Family

Gene family: HOM03D001396
(113 genes in 31 species)
specific family
Subfamily: ORTHO03D052506
(2 genes in 1 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Putative proline--tRNA ligase C19C7.06

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra017510

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006433	IEA	InterPro	prolyl-tRNA aminoacylation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	InterPro	nucleotide binding
GO:0004827	IEA	InterPro	proline-tRNA ligase activity
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016061	Proline-tRNA ligase, class II, C-terminal
IPR017449	Prolyl-tRNA synthetase, class II
IPR004154	Anticodon-binding
IPR004499	Proline-tRNA ligase, class IIa, archaeal-type

Mapman id	Description
29.1.40	protein.aa activation.bifunctional aminoacyl-tRNA synthetase

No SignalP domains detected for this gene.