PLAZA 3.0 Dicots gene overview : BR09G05500

Gene: BR09G05500 (Brassica rapa)

Overview

Gene Identifier: BR09G05500
Transcript Identifier: BR09G05500.1
Gene Type: Coding gene
Location: A09 : 2817181-2818772 : negative

Family

Gene family: HOM03D000021
(2196 genes in 29 species)
specific family
Subfamily: ORTHO03D026971
(5 genes in 5 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): 3-beta-glucosidase-like protein 3

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra035941

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0052543	ISO	PLAZA Integrative Orthology	callose deposition in cell wall	AT5G61130
GO:0005975	IEA	PLAZA Homology	carbohydrate metabolic process	HOM03D000021
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000021
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000021
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000021

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0030247	ISO	PLAZA Integrative Orthology	polysaccharide binding	AT5G61130
GO:0001872	ISO	PLAZA Integrative Orthology	(1->3)-beta-D-glucan binding	AT5G61130
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000021
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03D000021
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000021
GO:0004553	IEA	PLAZA Homology	hydrolase activity, hydrolyzing O-glycosyl compounds	HOM03D000021

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT5G61130
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT5G61130
GO:0009505	ISO	PLAZA Integrative Orthology	plant-type cell wall	AT5G61130
GO:0046658	ISO	PLAZA Integrative Orthology	anchored to plasma membrane	AT5G61130
GO:0031225	ISO	PLAZA Integrative Orthology	anchored to membrane	AT5G61130

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012946	X8

Mapman id	Description
26.4	misc.beta 1,3 glucan hydrolases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network