PLAZA 3.0 Dicots gene overview : BR08G20480

Gene: BR08G20480 (Brassica rapa)

Overview

Gene Identifier: BR08G20480
Transcript Identifier: BR08G20480.1
Gene Type: Coding gene
Location: A08 : 16248773-16251110 : negative

Family

Gene family: HOM03D005150
(40 genes in 30 species)
specific family
Subfamily: ORTHO03D006898
(32 genes in 30 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine): Histidine--tRNA ligase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra010749

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006418	IEA	InterPro	tRNA aminoacylation for protein translation
GO:0006427	IEA	InterPro	histidyl-tRNA aminoacylation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	InterPro	ATP binding
GO:0004812	IEA	InterPro	aminoacyl-tRNA ligase activity
GO:0004821	IEA	InterPro	histidine-tRNA ligase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	InterPro	cytoplasm
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT3G46100
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT3G46100

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR004154	Anticodon-binding
IPR015807	Histidine-tRNA ligase
IPR004516	Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit
IPR006195	Aminoacyl-tRNA synthetase, class II

Mapman id	Description
29.1.21	protein.aa activation.histidine-tRNA ligase

No SignalP domains detected for this gene.