PLAZA 3.0 Dicots gene overview : BR08G11930

Gene: BR08G11930 (Brassica rapa)

Overview

Gene Identifier: BR08G11930
Transcript Identifier: BR08G11930.1
Gene Type: Coding gene
Location: A08 : 11004466-11007373 : negative

Family

Gene family: HOM03D000055
(1402 genes in 29 species)
specific family
Subfamily: ORTHO03D020611
(6 genes in 2 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description (AnnoMine): Terpenoid synthase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra020953

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	InterPro	metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000287	IEA	InterPro	magnesium ion binding
GO:0016829	IEA	InterPro	lyase activity
GO:0010333	IEA	InterPro	terpene synthase activity
GO:0016835	IEA	PLAZA Homology	carbon-oxygen lyase activity	HOM03D000055
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000055
GO:0016838	IEA	PLAZA Homology	carbon-oxygen lyase activity, acting on phosphates	HOM03D000055
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000055
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000055
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000055

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR008949	Terpenoid synthase
IPR005630	Terpene synthase, metal-binding domain
IPR001906	Terpene synthase, N-terminal domain
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Mapman id	Description
16.1.5	secondary metabolism.isoprenoids.terpenoids

No SignalP domains detected for this gene.