Gene: BR04G15320 (Brassica rapa)

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Gene Identifier
BR04G15320
Transcript Identifier
BR04G15320.1
Gene Type
Coding gene
Location
A04 : 11865241-11869864 : negative

Family

Gene family
HOM03D000215
(477 genes in 30 species)
specific family
Subfamily
ORTHO03D000293
(107 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Protein argonaute
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
protein_idBra034318

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G32940 AT2G27040
GO:0006342ISOPLAZA Integrative Orthologychromatin silencingAT2G32940 AT2G27040
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G32940 AT2G27040
GO:0031048ISOPLAZA Integrative Orthologychromatin silencing by small RNAAT2G27040
GO:0009816ISOPLAZA Integrative Orthologydefense response to bacterium, incompatible interactionAT2G27040
GO:0010495ISOPLAZA Integrative Orthologylong-distance posttranscriptional gene silencingAT2G27040
GO:0051567ISOPLAZA Integrative Orthologyhistone H3-K9 methylationAT2G27040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0003676IEAInterPronucleic acid binding
GO:0035197ISOPLAZA Integrative OrthologysiRNA bindingAT2G32940 AT2G27040

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G32940
GO:0015030ISOPLAZA Integrative OrthologyCajal bodyAT2G27040
GO:0005719ISOPLAZA Integrative Orthologynuclear euchromatinAT2G27040
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G27040

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003165Stem cell self-renewal protein Piwi
IPR003100Argonaute/Dicer protein, PAZ domain
IPR012337Ribonuclease H-like domain
IPR014811Domain of unknown function DUF1785

Mapman id Description
27.3.36RNA.regulation of transcription.Argonaute
No SignalP domains detected for this gene.