PLAZA 3.0 Dicots gene overview : BR04G08900

Gene: BR04G08900 (Brassica rapa)

Overview

Gene Identifier: BR04G08900
Transcript Identifier: BR04G08900.1
Gene Type: Coding gene
Location: A04 : 7098068-7099684 : negative

Family

Gene family: HOM03D001396
(113 genes in 31 species)
specific family
Subfamily: ORTHO03D001812
(46 genes in 28 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Proline--tRNA ligase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra028248

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006433	IEA	InterPro	prolyl-tRNA aminoacylation
GO:0006418	IEA	InterPro	tRNA aminoacylation for protein translation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	InterPro	nucleotide binding
GO:0004827	IEA	InterPro	proline-tRNA ligase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0004812	IEA	InterPro	aminoacyl-tRNA ligase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	InterPro	cytoplasm
GO:0009506	ISO	PLAZA Tree-based Orthology	plasmodesma	AT3G62120
GO:0005829	ISO	PLAZA Tree-based Orthology	cytosol	AT3G62120
GO:0016020	ISO	PLAZA Tree-based Orthology	membrane	AT3G62120

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR004499	Proline-tRNA ligase, class IIa, archaeal-type
IPR004154	Anticodon-binding
IPR002314	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain
IPR016061	Proline-tRNA ligase, class II, C-terminal
IPR002316	Proline-tRNA ligase, class IIa
IPR006195	Aminoacyl-tRNA synthetase, class II
IPR017449	Prolyl-tRNA synthetase, class II

Mapman id	Description
29.1.40	protein.aa activation.bifunctional aminoacyl-tRNA synthetase

No SignalP domains detected for this gene.