PLAZA 3.0 Dicots gene overview : BR04G04700

Gene: BR04G04700 (Brassica rapa)

Overview

Gene Identifier: BR04G04700
Transcript Identifier: BR04G04700.1
Gene Type: Coding gene
Location: A04 : 3369262-3372215 : positive

Family

Gene family: HOM03D000034
(1745 genes in 31 species)
specific family
Subfamily: ORTHO03D001727
(47 genes in 28 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): ASPARTIC PROTEASE IN GUARD CELL 1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra014819

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006508	IEA	InterPro	proteolysis
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000034
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000034
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03D000034
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03D000034
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000034

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004190	IEA	InterPro	aspartic-type endopeptidase activity
GO:0070011	IEA	PLAZA Homology	peptidase activity, acting on L-amino acid peptides	HOM03D000034
GO:0004175	IEA	PLAZA Homology	endopeptidase activity	HOM03D000034
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000034
GO:0070001	IEA	PLAZA Homology	aspartic-type peptidase activity	HOM03D000034
GO:0008233	IEA	PLAZA Homology	peptidase activity	HOM03D000034
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000034

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009505	ISO	PLAZA Integrative Orthology	plant-type cell wall	AT3G54400 AT5G07030
GO:0048046	ISO	PLAZA Integrative Orthology	apoplast	AT3G54400
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT3G54400
GO:0005618	ISO	PLAZA Integrative Orthology	cell wall	AT3G54400

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR021109	Aspartic peptidase domain
IPR001461	Aspartic peptidase

Mapman id	Description
27.3.99	RNA.regulation of transcription.unclassified

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network