PLAZA 3.0 Dicots gene overview : BR04G04660

Gene: BR04G04660 (Brassica rapa)

Overview

Gene Identifier: BR04G04660
Transcript Identifier: BR04G04660.1
Gene Type: Coding gene
Location: A04 : 3342634-3348158 : positive

Family

Gene family: HOM03D004901
(41 genes in 30 species)
specific family
Subfamily: ORTHO03D008367
(30 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine): F-box protein At3g54460

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra014815

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0004386	IEA	InterPro	helicase activity
GO:0008270	IEA	InterPro	zinc ion binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003677	IEA	InterPro	DNA binding
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT3G54460

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR001650	Helicase, C-terminal
IPR017907	Zinc finger, RING-type, conserved site
IPR001810	F-box domain
IPR011124	Zinc finger, CW-type
IPR000330	SNF2-related

Mapman id	Description
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors

No SignalP domains detected for this gene.