Gene: BR03G12090 (Brassica rapa)

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Gene Identifier
BR03G12090
Transcript Identifier
BR03G12090.1
Gene Type
Coding gene
Location
A03 : 5434823-5437130 : negative

Family

Gene family
HOM03D000390
(320 genes in 31 species)
specific family
Subfamily
ORTHO03D028855
(4 genes in 1 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
shock protein HSP 90
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
protein_idBra028924

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006457IEAInterProprotein folding
GO:0006950IEAInterProresponse to stress
GO:0009870ISOPLAZA Integrative Orthologydefense response signaling pathway, resistance gene-dependentSL12G015880
GO:0010187ISOPLAZA Integrative Orthologynegative regulation of seed germinationAT5G56030
GO:0090332ISOPLAZA Integrative Orthologystomatal closureAT5G56030
GO:0009816ISOPLAZA Integrative Orthologydefense response to bacterium, incompatible interactionAT5G56030 AT5G56010 AT5G52640
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT5G56030
GO:0009414ISOPLAZA Integrative Orthologyresponse to water deprivationAT5G56030
GO:0010286ISOPLAZA Integrative Orthologyheat acclimationAT5G56030
GO:0050821ISOPLAZA Integrative Orthologyprotein stabilizationAT5G56030
GO:0048366ISOPLAZA Integrative Orthologyleaf developmentAT5G56030
GO:0006952ISOPLAZA Integrative Orthologydefense responseAT5G56030
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT5G56030
GO:0009408ISOPLAZA Integrative Orthologyresponse to heatAT5G56030 AT5G56010 AT5G52640
GO:0071277ISOPLAZA Integrative Orthologycellular response to calcium ionAT5G56010
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT5G52640
GO:0046685ISOPLAZA Integrative Orthologyresponse to arsenic-containing substanceAT5G52640
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03D000390
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03D000390

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0051082IEAInterProunfolded protein binding
GO:0005524IEAInterProATP binding
GO:0016887ISOPLAZA Integrative OrthologyATPase activityAT5G56030 AT5G56010
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT5G56030 AT5G52640
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000390
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000390
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000390
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000390
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000390
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000390
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000390
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000390
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000390
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000390
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000390

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005794ISOPLAZA Integrative OrthologyGolgi apparatusAT5G56030 AT5G56010 AT5G56000
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G56030
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G56030 AT5G56010 AT5G56000 AT5G52640
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G56030 AT5G56000
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT5G56030
GO:0005618ISOPLAZA Integrative Orthologycell wallAT5G56030 AT5G56000 AT5G52640
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G56010 AT5G56000 AT5G52640
GO:0016020ISOPLAZA Integrative OrthologymembraneAT5G56010
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT5G56010
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT5G56000
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT5G56000
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT5G56000

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR020568Ribosomal protein S5 domain 2-type fold
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR001404Heat shock protein Hsp90 family
IPR020575Heat shock protein Hsp90, N-terminal
IPR019805Heat shock protein Hsp90, conserved site

Mapman id Description
20.2.1stress.abiotic.heat
No SignalP domains detected for this gene.