PLAZA 3.0 Dicots gene overview : BR02G07230

Gene: BR02G07230 (Brassica rapa)

Overview

Gene Identifier: BR02G07230
Transcript Identifier: BR02G07230.1
Gene Type: Coding gene
Location: A02 : 3621574-3625703 : negative

Family

Gene family: HOM03D000644
(212 genes in 31 species)
specific family
Subfamily: ORTHO03D004403
(35 genes in 28 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Alpha-mannosidase 2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra023496

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	InterPro	carbohydrate metabolic process
GO:0006013	IEA	InterPro	mannose metabolic process
GO:0006487	ISO	PLAZA Integrative Orthology	protein N-linked glycosylation	AT5G14950
GO:0019318	IEA	PLAZA Homology	hexose metabolic process	HOM03D000644
GO:0005996	IEA	PLAZA Homology	monosaccharide metabolic process	HOM03D000644

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0030246	IEA	InterPro	carbohydrate binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0015923	IEA	InterPro	mannosidase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0004559	IEA	InterPro	alpha-mannosidase activity
GO:0004553	IEA	InterPro	hydrolase activity, hydrolyzing O-glycosyl compounds

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005802	ISO	PLAZA Integrative Orthology	trans-Golgi network	AT5G14950
GO:0005768	ISO	PLAZA Integrative Orthology	endosome	AT5G14950
GO:0005794	ISO	PLAZA Integrative Orthology	Golgi apparatus	AT5G14950

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR015341	Glycoside hydrolase, family 38, central domain
IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel
IPR027291	Glycoside hydrolase 38/57, N-terminal domain
IPR000602	Glycoside hydrolase family 38, N-terminal domain
IPR011013	Galactose mutarotase-like domain
IPR011682	Glycosyl hydrolase family 38, C-terminal
IPR013780	Glycosyl hydrolase, family 13, all-beta

Mapman id	Description
29.7.7	protein.glycosylation.mannosyl-oligosaccharide-1,3-1,6-alpha-mannosidase(GMII)

No SignalP domains detected for this gene.