Gene: BR01G08150 (Brassica rapa)

Overview top

Gene Identifier
BR01G08150
Transcript Identifier
BR01G08150.1
Gene Type
Coding gene
Location
A01 : 4045507-4053593 : negative

Family

Gene family
HOM03D003496
(52 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
factor Ts
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
protein_idBra011081

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006418IEAInterProtRNA aminoacylation for protein translation
GO:0006414IEAInterProtranslational elongation
GO:0006422IEAInterProaspartyl-tRNA aminoacylation
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT4G29060 AT4G26870 AT4G31180

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0003723IEAInterProRNA binding
GO:0004815IEAInterProaspartate-tRNA ligase activity
GO:0003676IEAInterPronucleic acid binding
GO:0003746IEAInterProtranslation elongation factor activity
GO:0005524IEAInterProATP binding
GO:0004812IEAInterProaminoacyl-tRNA ligase activity
GO:0000166IEAInterPronucleotide binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAInterProintracellular
GO:0005737IEAInterProcytoplasm
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT4G29060
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT4G29060
GO:0009941ISOPLAZA Integrative Orthologychloroplast envelopeAT4G29060
GO:0005829ISOPLAZA Integrative OrthologycytosolAT4G26870 AT4G31180
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT4G26870

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012340Nucleic acid-binding, OB-fold
IPR014039Translation elongation factor EFTs/EF1B, dimerisation
IPR003029Ribosomal protein S1, RNA-binding domain
IPR004523Aspartyl-tRNA synthetases
IPR000449Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR022967RNA-binding domain, S1
IPR009060UBA-like
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR018101Translation elongation factor Ts, conserved site
IPR016090Phospholipase A2 domain
IPR006195Aminoacyl-tRNA synthetase, class II
IPR001816Translation elongation factor EFTs/EF1B
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like

Mapman id Description
29.1.12protein.aa activation.aspartate-tRNA ligase
No SignalP domains detected for this gene.