PLAZA 3.0 Dicots gene overview : BR00G05970

Gene: BR00G05970 (Brassica rapa)

Overview

Gene Identifier: BR00G05970
Transcript Identifier: BR00G05970.1
Gene Type: Coding gene
Location: Scaffold000229 : 20429-21589 : positive

Family

Gene family: HOM03D000017
(2380 genes in 31 species)
specific family
Subfamily: ORTHO03D002416
(42 genes in 28 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): protein ligase ATL6

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
protein_id	Bra040642

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009816	ISO	PLAZA Tree-based Orthology	defense response to bacterium, incompatible interaction	AT3G05200
GO:0010200	ISO	PLAZA Tree-based Orthology	response to chitin	AT3G05200
GO:0016567	ISO	PLAZA Tree-based Orthology	protein ubiquitination	AT3G05200

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004842	ISO	PLAZA Tree-based Orthology	ubiquitin-protein ligase activity	AT3G05200
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000017
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000017
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000017
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000017
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000017

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Tree-based Orthology	plasma membrane	AT3G05200

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR001841	Zinc finger, RING-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

SignalP	Description
SignalP-TM	Signal Peptide detected using TM network