Gene: BR00G02080 (Brassica rapa)

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Gene Identifier
BR00G02080
Transcript Identifier
BR00G02080.1
Gene Type
Coding gene
Location
Scaffold000178 : 169186-170427 : positive

Family

Gene family
HOM03D003568
(51 genes in 30 species)
specific family
Subfamily
ORTHO03D003394
(38 genes in 30 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
directed RNA polymerases IV and V subunit 3B
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
protein_idBra039839

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEAInterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003899IEAInterProDNA-directed RNA polymerase activity
GO:0046983IEAInterProprotein dimerization activity
GO:0003677IEAInterProDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G15400

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT2G15430 AT2G15400
GO:0005665ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase II, core complexAT2G15430 AT2G15400
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT2G15430 AT2G15400
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G15430
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT2G15430
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G15430

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR011262DNA-directed RNA polymerase, insert domain
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-type

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.