Gene: ATR_00121G00230 (Amborella trichopoda)

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Gene Identifier
ATR_00121G00230
Transcript Identifier
ATR_00121G00230.1
Gene Type
Coding gene
Location
scaffold00121 : 1418278-1466954 : positive

Family

Gene family
HOM03D000644
(212 genes in 31 species)
specific family
Subfamily
ORTHO03D000289
(109 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine)
Lysosomal alpha-mannosidase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00121.23
idevm_27.model.AmTr_v1.0_scaffold00121.23

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAInterProcarbohydrate metabolic process
GO:0006013IEAInterPromannose metabolic process
GO:0019318IEAPLAZA Homologyhexose metabolic processHOM03D000644
GO:0005996IEAPLAZA Homologymonosaccharide metabolic processHOM03D000644

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030246IEAInterProcarbohydrate binding
GO:0008270IEAInterProzinc ion binding
GO:0015923IEAInterPromannosidase activity
GO:0003824IEAInterProcatalytic activity
GO:0004553IEAInterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004559IEAInterProalpha-mannosidase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005773ISOPLAZA Integrative OrthologyvacuoleAT3G26720 AT5G13980
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT3G26720 AT5G13980
GO:0009505ISOPLAZA Integrative Orthologyplant-type cell wallAT3G26720 AT5G13980
GO:0005618ISOPLAZA Integrative Orthologycell wallAT5G13980
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT5G13980

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011013Galactose mutarotase-like domain
IPR013780Glycosyl hydrolase, family 13, all-beta
IPR000602Glycoside hydrolase family 38, N-terminal domain
IPR015341Glycoside hydrolase, family 38, central domain
IPR011682Glycosyl hydrolase family 38, C-terminal
IPR011330Glycoside hydrolase/deacetylase, beta/alpha-barrel
IPR027291Glycoside hydrolase 38/57, N-terminal domain

No MapMan annotations defined for this gene.
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network