Gene: ATR_00069G01180 (Amborella trichopoda)

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Gene Identifier
ATR_00069G01180
Transcript Identifier
ATR_00069G01180.1
Gene Type
Coding gene
Location
scaffold00069 : 2245227-2295113 : positive

Family

Gene family
HOM03D000511
(254 genes in 31 species)
specific family
Subfamily
ORTHO03D001050
(59 genes in 26 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
directed RNA polymerase IV subunit 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00069.119
idevm_27.model.AmTr_v1.0_scaffold00069.119

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEAInterProtranscription, DNA-templated
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G40030 AT1G63020
GO:0035194ISOPLAZA Integrative Orthologyposttranscriptional gene silencing by RNAAT2G40030
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G40030
GO:0010495ISOPLAZA Integrative Orthologylong-distance posttranscriptional gene silencingAT1G63020
GO:0007267ISOPLAZA Integrative Orthologycell-cell signalingAT1G63020
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT1G63020
GO:0031047ISOPLAZA Integrative Orthologygene silencing by RNAAT1G63020
GO:0006346ISOPLAZA Integrative Orthologymethylation-dependent chromatin silencingAT1G63020

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003899IEAInterProDNA-directed RNA polymerase activity
GO:0003677IEAInterProDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G40030 AT1G63020
GO:0046914IEAPLAZA Homologytransition metal ion bindingHOM03D000511
GO:0034062IEAPLAZA HomologyRNA polymerase activityHOM03D000511
GO:0016779IEAPLAZA Homologynucleotidyltransferase activityHOM03D000511

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G40030
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G40030
GO:0030880ISOPLAZA Integrative OrthologyRNA polymerase complexAT2G40030
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT2G40030
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G40030 AT1G63020
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT2G40030 AT1G63020
GO:0005654ISOPLAZA Integrative OrthologynucleoplasmAT1G63020

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR007080RNA polymerase Rpb1, domain 1
IPR006592RNA polymerase, N-terminal
IPR007066RNA polymerase Rpb1, domain 3
IPR007083RNA polymerase Rpb1, domain 4
IPR000722RNA polymerase, alpha subunit

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.