Gene: ATR_00064G00820 (Amborella trichopoda)

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Gene Identifier
ATR_00064G00820
Transcript Identifier
ATR_00064G00820.1
Gene Type
Coding gene
Location
scaffold00064 : 3310046-3311412 : negative

Family

Gene family
HOM03D001767
(94 genes in 31 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
DNA ligase 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00064.83
idevm_27.model.AmTr_v1.0_scaffold00064.83

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006281IEAInterProDNA repair
GO:0051103IEAInterProDNA ligation involved in DNA repair
GO:0006310IEAInterProDNA recombination
GO:0006260IEAPLAZA HomologyDNA replicationHOM03D001767

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003909IEAInterProDNA ligase activity
GO:0003910IEAInterProDNA ligase (ATP) activity
GO:0005524IEAInterProATP binding
GO:0016886IEAPLAZA Homologyligase activity, forming phosphoric ester bondsHOM03D001767
GO:0003677IEAPLAZA HomologyDNA bindingHOM03D001767

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012340Nucleic acid-binding, OB-fold
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR012310DNA ligase, ATP-dependent, central
IPR016059DNA ligase, ATP-dependent, conserved site

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.