Gene: ATR_00048G00680 (Amborella trichopoda)
Overview 
- Gene Identifier
- ATR_00048G00680
- Transcript Identifier
- ATR_00048G00680.1
- Gene Type
- Coding gene
- Location
- scaffold00048 : 1687697-1692801 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description (AnnoMine)
-
Probable transcription factor KAN2
Description of best ortholog(s):

Identifiers
Identifier | Name |
---|---|
GeneName | evm_27.TU.AmTr_v1.0_scaffold00048.68 |
id | evm_27.model.AmTr_v1.0_scaffold00048.68 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0003682 | IEA | InterPro | chromatin binding | |
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0005488 | IEA | PLAZA Homology | binding | HOM03D000096 |
GO:1901363 | IEA | PLAZA Homology | heterocyclic compound binding | HOM03D000096 |
GO:0097159 | IEA | PLAZA Homology | organic cyclic compound binding | HOM03D000096 |
GO:0003676 | IEA | PLAZA Homology | nucleic acid binding | HOM03D000096 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.