Gene: ATR_00047G00280 (Amborella trichopoda)

Overview top

Gene Identifier
ATR_00047G00280
Transcript Identifier
ATR_00047G00280.1
Gene Type
Coding gene
Location
scaffold00047 : 964064-977004 : positive

Family

Gene family
HOM03D001146
(134 genes in 31 species)
specific family
Subfamily
ORTHO03D008888
(29 genes in 27 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine)
Meiotic recombination protein SPO11-1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00047.32
idevm_27.model.AmTr_v1.0_scaffold00047.32

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006259IEAInterProDNA metabolic process
GO:0051026ISOPLAZA Integrative Orthologychiasma assemblyAT3G13170
GO:0042138ISOPLAZA Integrative Orthologymeiotic DNA double-strand break formationAT3G13170
GO:0000706ISOPLAZA Integrative Orthologymeiotic DNA double-strand break processingAT3G13170
GO:0034090ISOPLAZA Integrative Orthologymaintenance of meiotic sister chromatid cohesionAT3G13170
GO:0007129ISOPLAZA Integrative OrthologysynapsisAT3G13170
GO:0007131ISOPLAZA Integrative Orthologyreciprocal meiotic recombinationAT3G13170

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003824IEAInterProcatalytic activity
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005694IEAInterProchromosome
GO:0005634ISOPLAZA Integrative OrthologynucleusAT3G13170

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013048Meiotic recombination, Spo11
IPR002815Spo11/DNA topoisomerase VI, subunit A
IPR011991Winged helix-turn-helix DNA-binding domain
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminal

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.