Gene: ATR_00033G02220 (Amborella trichopoda)

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Gene Identifier
ATR_00033G02220
Transcript Identifier
ATR_00033G02220.1
Gene Type
Coding gene
Location
scaffold00033 : 4929598-4933871 : negative

Family

Gene family
HOM03D000522
(249 genes in 30 species)
specific family
Subfamily
ORTHO03D004229
(36 genes in 27 species)
specific family

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Descriptions

Description (AnnoMine)
stranded RNA-binding protein 8
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00033.224
idevm_27.model.AmTr_v1.0_scaffold00033.224

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016075IEAInterProrRNA catabolic process
GO:0010589ISOPLAZA Integrative Orthologyleaf proximal/distal pattern formationAT1G09700
GO:0010305ISOPLAZA Integrative Orthologyleaf vascular tissue pattern formationAT1G09700
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G09700
GO:0031054ISOPLAZA Integrative Orthologypre-miRNA processingAT1G09700
GO:0035279ISOPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G09700
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT1G09700
GO:0009737ISOPLAZA Integrative Orthologyresponse to abscisic acidAT1G09700
GO:0009733ISOPLAZA Integrative Orthologyresponse to auxinAT1G09700
GO:0009735ISOPLAZA Integrative Orthologyresponse to cytokininAT1G09700

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004525IEAInterProribonuclease III activity
GO:0003723IEAInterProRNA binding
GO:0003725ISOPLAZA Integrative Orthologydouble-stranded RNA bindingOS12G01916 AT1G09700
GO:0035198ISOPLAZA Integrative OrthologymiRNA bindingAT1G09700
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G09700

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT1G09700
GO:0015030ISOPLAZA Integrative OrthologyCajal bodyAT1G09700
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G09700
GO:0005622IEAPLAZA HomologyintracellularHOM03D000522

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR014720Double-stranded RNA-binding domain
IPR011907Ribonuclease III

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.